Keep targets and result summaries
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SPIRITT
Synthesize BioSynthesize Bio
Experiments in silico, results in hand
SPIRITT turns your experiment description into structured sample groups mapped to Synthesize Bio's ontology, runs the gene expression analysis as soon as you approve the groups, then downloads the counts and delivers results, figures and notes to your team.
What you can do with Synthesize Bio.
Designs become sample groups
Map conditions, perturbations and cell types to Synthesize Bio's controlled vocabulary.
Analyses run end to end
Launch bulk or single-cell differential expression and follow every job to completion.
Raw counts in your stack
Pull the full counts matrix for downstream analysis, figures and archives.
Works with your other apps.
Get started in three steps.
01
Open your workspace
Start a workspace for your lab or research program.
02
Connect Synthesize Bio
Sign in to Synthesize Bio and connect the tools where your lab keeps data and notes.
03
Describe the experiment
Explain the comparison. You approve the sample groups, SPIRITT runs and delivers.
Hand over a mission.
Choose a mission. Make it yours.
Put Synthesize Bio to work.
From hypothesis to results without the wait.
Questions
Synthesize Bio, with SPIRITT.
01What does SPIRITT do with Synthesize Bio?+
It turns your experiment into sample groups, maps them to Synthesize Bio's controlled vocabulary, runs bulk or single-cell differential expression analyses and retrieves results and raw counts.
02Why do I approve the sample groups?+
Synthesize Bio starts an analysis once the person who requested it confirms the resolved groups. SPIRITT shows them, you approve, and it runs everything else.
03Which modalities are supported?+
Bulk and single-cell gene expression.
04What comes back from an analysis?+
Job status and results, plus a download link for the raw counts, typically 20,000 or more genes across every sample.
05Can SPIRITT handle the downstream work?+
Yes. It builds plots, compares results with your lab data, cites literature and files everything where your team works.
06What do I need to get started?+
A Synthesize Bio account to sign in with, and the tools where your lab keeps data and notes.